Glossary — Crystal–Mycelial Engine
RTT / CMH / MSRM Terminology Reference#
1. Biological Terms#
Hyphal Channel#
A biological routing structure formed by mycelial growth. Serves as the initial geometry for hybrid infiltration and mineral propagation.
Branch Scar#
A structural mark left by a branching event. Encodes historical routing and contributes to biological memory.
Pulse Pathway#
A conductive biological route through which weak electrical pulses propagate across hyphal networks.
Bio Map (bio_map)#
The geometry map produced during the Biological Growth Regime. Used as the substrate template for hybrid and mineral transitions.
2. Hybrid Layer Terms#
Hybrid Substrate#
The transitional layer formed when mineral precursors infiltrate biological channels and resonance fields align both substrates.
Channel Infiltration#
The process by which mineral precursor material fills biological channels during HRR.
Memory Transfer#
Mapping biological structural memory into mineral defect patterns during hybrid alignment.
Resonance Alignment#
Synchronization of biological and mineral waveforms using coherence fields.
3. Mineral Layer Terms#
Crystal Domain#
A region of ordered lattice structure formed during mineral lock‑in. Encodes stable logic.
Impurity Band#
A mineral defect region that stores memory. Formed under supersaturation and resonance alignment.
Lattice Propagation#
The forward growth of crystal structure along preserved biological geometry.
Domain Memory#
Memory encoded in crystal domains and impurity bands during MLR.
4. RTT Operator Terms#
Propagation Operators (P)#
Operators controlling geometry, routing, and front movement.
Examples: P.trace_extend, P.front_propagate
Energy Operators (E)#
Operators controlling pulses, resonance fields, and waveform alignment.
Examples: E.logic_pulse, E.resonance_field
Gradient Operators (G)#
Operators controlling directional fields and environmental gradients.
Examples: G.nutrient_gradient, G.resonance_gradient
Memory Operators (M)#
Operators encoding structural and domain memory.
Examples: M.route_memory, M.domain_memory
Substrate Operators (S)#
Operators controlling hybridization and substrate transitions.
Examples: S.channel_fill, S.dual_substrate_alignment
5. MSRM Regime Terms#
Biological Growth Regime (BGR)#
The regime in which biological geometry forms under moisture, nutrient, and EM envelopes.
Hybrid Resonance Regime (HRR)#
The regime in which biological and mineral substrates align under ion saturation and coherence fields.
Mineral Lock‑In Regime (MLR)#
The regime in which mineral lattice propagation stabilizes under supersaturation and thermal envelopes.
6. Envelope Terms#
Moisture Envelope#
Environmental moisture range controlling biological activity and hybrid transition readiness.
Ion Saturation Envelope#
Mineral precursor concentration range enabling infiltration and hybrid formation.
Coherence Field Envelope#
Resonance field frequency range required for hybrid alignment.
Supersaturation Envelope#
Mineral concentration threshold required for lattice propagation and domain formation.
Thermal Envelope#
Temperature shift required for mineral lock‑in and domain stabilization.
7. CME‑Specific Terms#
Dual‑Substrate Alignment#
Maintaining coherence between biological geometry and mineral lattice during transition.
Hybrid Layer#
Intermediate substrate formed during HRR, containing both biological structure and mineral precursor.
Substrate Swap#
The transition from biological to mineral substrate while preserving geometry and memory.